Importing and simulating data.- Data checking.- Single-QTL analysis.- Non-normal phenotypes.- Experimental design and power.- Working with covariates.- Two-dimensional, two-QTL scans.- Fit and exploration of multiple-QTL models.- Case study I.- Case study II.

Comprehensive discussion of QTL mapping concepts and theory

Detailed instructions on the use of the R/qtl software, the most featured and flexible software for QTL mapping

Two case studies illustrate QTL analysis in its entirety